PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 897795
Common NameARALYDRAFT_897795
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 220aa    MW: 23533.6 Da    PI: 9.1562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
897795genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-192473255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++ a++ ++g
  897795 24 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDTAARDFRG 73
            59*******.**********8...557**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-132473IPR001471AP2/ERF domain
SMARTSM003804.8E-372487IPR001471AP2/ERF domain
PROSITE profilePS5103224.2632481IPR001471AP2/ERF domain
CDDcd000184.73E-332481No hitNo description
SuperFamilySSF541712.03E-222482IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-322481IPR001471AP2/ERF domain
PRINTSPR003671.0E-112536IPR001471AP2/ERF domain
PRINTSPR003671.0E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAKMGLKPDP ATTNPTNNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA  60
ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS QSSTLDCASP PTVVVPSATA  120
GNVPPQLELS LGGGACYQIP MARPVYFLDL MGIGNVGRGQ PPPVTSAFRS SVVHVPTKMT  180
CGAQSDSDSS SVVDFEGGME KRSQPFDLDL NLPPPSEQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-202081163ATERF1
3gcc_A2e-202081163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0081060.0AB008106.1 Arabidopsis thaliana AtERF-4 mRNA for ethylene responsive element binding factor 4, complete cds.
GenBankAP0004130.0AP000413.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K7L4.
GenBankAY0862320.0AY086232.1 Arabidopsis thaliana clone 22775 mRNA, complete sequence.
GenBankAY1400300.0AY140030.1 Arabidopsis thaliana ethylene responsive element binding factor 4 (AtERF4) (At3g15210) mRNA, complete cds.
GenBankBT0103250.0BT010325.1 Arabidopsis thaliana At3g15210 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882920.11e-161ATERF-4/ATERF4/ERF4/RAP2.5
SwissprotO803401e-133ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLD7L4021e-161D7L402_ARALL; ATERF-4/ATERF4/ERF4/RAP2.5
STRINGscaffold_301765.11e-161(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-112ethylene responsive element binding factor 4